INOGENGenetics Redefined

Guide

False positive and false negative results in laboratory testing

No laboratory test is perfect, and any test can occasionally report a positive result in a person who does not have the condition (a false positive) or a negative result in a person who does (a false negative). Understanding why this happens helps clinicians and patients interpret results sensibly and decide when further testing is needed.

Sensitivity and specificity

Sensitivity is the proportion of people who have a condition whom the test correctly identifies as positive. Specificity is the proportion of people without the condition whom the test correctly identifies as negative.

  • Sensitivity = true positives ÷ (true positives + false negatives)
  • Specificity = true negatives ÷ (true negatives + false positives)

A test with high sensitivity misses few cases, so it gives few false negatives. A test with high specificity gives few false positives. The two values can trade against each other: raising or lowering the cut-off point of a test changes both.

Predictive values and prevalence

Patients usually ask a different question: if my result is positive, how likely is it that I have the condition? This is the positive predictive value (PPV). The negative predictive value (NPV) is the probability that a person with a negative result truly does not have the condition. Predictive values depend on how common the condition is among the people tested.

As a worked example, suppose a test with 99% sensitivity and 99% specificity is used in 10 000 people, of whom 1% (100 people) have the condition. The test detects 99 of the 100 true cases, but it also gives a positive result in 1% of the 9 900 unaffected people, which is 99 false positives. Of the 198 positive results, only half are true positives. Used in a group where the condition is more common, the same test would have a higher PPV.

Why false results happen

Timing is a common cause, because early in an infection there may not yet be enough of the target for the test to detect. For HIV, the CDC describes a window period after exposure during which a test may not yet detect infection: about 10 to 33 days for nucleic acid tests, 18 to 45 days for laboratory antigen and antibody tests, and 23 to 90 days for most antibody tests. A test taken too early can therefore be falsely negative.

Biology can also produce misleading results: in prenatal cell-free DNA screening, the DNA tested comes mainly from the placenta, and a chromosome change confined to the placenta can produce a false positive result for the fetus. Problems at any step from sample collection to reporting can also affect a result, which is why laboratories use validated methods, controls and quality assurance.

Retesting and confirmatory testing

A result should be interpreted together with the person's symptoms, history and risk. When a result does not fit the clinical picture, the clinician may discuss it with the laboratory or repeat the test. After a possible HIV exposure, a negative result should be repeated once the window period for that test type has passed, and a positive HIV antibody result needs a follow-up test to confirm it. In prenatal screening, the Royal Australian and New Zealand College of Obstetricians and Gynaecologists (RANZCOG) recommends that anyone with a high chance result on a screening test is offered diagnostic confirmation before further management decisions are made.

Screening tests and diagnostic tests

A screening test sorts people into higher and lower chance groups. A diagnostic test aims to establish whether a condition is present. A positive screening result is a reason for further assessment, not a diagnosis, and a negative screening result lowers the chance of a condition without excluding it entirely.

Sources

  1. Trevethan R. Sensitivity, Specificity, and Predictive Values: Foundations, Pliabilities, and Pitfalls in Research and Practice. Frontiers in Public Health, 2017
  2. CDC, Getting Tested for HIV, 2026
  3. RANZCOG, Screening and diagnosis of fetal structural anomalies and chromosome conditions (C-Obs 35), 2024

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